Inantly composed in the Bacteroides clarus six.9 27.1 95.8 68.4 0.0001 Firmicutes phylum and from the
Inantly composed on the Bacteroides clarus 6.9 27.1 95.eight 68.four 0.0001 Firmicutes phylum and with the Lachnospiraceae household, like the-3.8 species RuminococBacteroides stercoris CAG:120 3.4 13.three 44.five 33.9 -3.7 0.0028 cus lactaris, Ruminococcus gnavus, and Lachnospiraceae bacterium, while the cecal luBacteroides sp. AF35-22 39.two 49.2 266.five 194.2 -2.eight 0.0076 guys MF-fed relative to HM-fed piglets had higher abundance2.9 the Bacteroides Clostridium clostridioforme CAG:132 from the 3.0 six.two 21.7 21.7 – of 0.0076 genera which includes Bacteroides clarus and Bacteroides 30.four stercoris. Moreover, the 0.0112 cecum Bacteroides stercoris ATCC 43183 4.0 15.7 35.9 -3.2 Bacteroides sp. AM44-19 of MF-fed piglets had greater abundance of your Clostridium clostridioforme (fold-change 57.6 62.1 312.0 229.9 -2.4 0.0131 Firmicutes D-Ribonolactone Bacterial bacterium CAG:129(FC) = two.9) in comparison with the HM-fed group. 1.eight 6.9 18.0 12.eight -3.three 0.0159 Firmicutes bacterium CAG:137 2.five 11.two 78.9 82.5 -5.0 0.0164 Firmicutes bacterium CAG:176 two.two three.eight 17.0 16.0 -3.0 0.0197 Bacteroides clarus YIT 12056 three.four 13.three 32.0 30.7 -3.2 0.Bacterial OrganismNutrients 2021, 13,6 ofTable 1. Cont. Bacterial Organism 1 (Clostridium) clostridioforme 90A7 Clostridium bolteae (strain ATCC BAA-613/WAL 16351) (Ruminococcus) lactaris Firmicutes bacterium OM07-11 Ruminococcus gnavus Firmicutes bacterium AM41-5BH Mediterraneibacter sp. gm002 Firmicutes bacterium Metalaxyl manufacturer AM43-11BH (Ruminococcus) torques ATCC 27756 Firmicutes bacterium AM31-12AC Firmicutes bacterium CAG:212 Faecalicatena orotica Selenomonas ruminantium Dorea sp. CAG:317 Hespellia stercorisuis DSM 15480 Lachnospiraceae bacterium AM40-2BH Faecalicatena contorta Lachnospiraceae bacterium 2_1_58FAA Lachnospiraceae bacterium TM07-2AC Dorea sp. OM07-5 Lachnospiraceae bacterium OF09-33XDHM two 6.7 2.five 135.1 82.1 303.5 199.0 47.7 275.four 73.2 209.2 116.eight 50.three 233.three 13.1 12.eight 139.two 164.five 88.4 117.five 44.0 18.SD 7.9 6.4 113.0 51.3 202.5 119.8 39.0 158.two 67.4 169.6 57.1 38.1 140.5 11.0 11.7 116.six 122.5 73.1 112.5 36.5 20.MF two 26.9 16.2 3.6 2.five 7.1 15.six four.five 19.five three.two six.4 three.five six.two 41.9 two.0 0.0 33.0 33.1 0.three 0.0 0.0 0.SD 27.2 15.0 ten.9 5.4 15.four 15.9 7.7 18.six 11.2 ten.eight 8.3 12.six 106.eight five.1 0.0 51.5 41.five 0.9 0.0 0.0 0.log2 FCp-Value 4 0.0375 0.0375 0.0001 0.0001 0.0001 0.0001 0.0009 0.0012 0.0028 0.0067 0.0087 0.0131 0.0152 0.0485 0.0152 0.0152 0.0174 0.0197 0.0197 0.0389 0.-2.0 -2.5.two five.1 five.four three.7 3.four three.eight 4.5 five.0 five.0 3.0 2.5 2.7 NA two.1 2.3 8.3 NA NA NAThe raw spectral counts matching for the identified bacterial species have been analyzed making use of tweeDEseq package in Bioconductor. 2 HM and MF columns indicate imply value in the total spectral counts followed by the common deviation in the mean (SD). 3 Log2 FC will be the log2 from the HM to MF ratio. 4 Benjamini ochberg correction for many testing was applied to adjust p-values.Table two. Bacterial protein profile of cecal content of piglets (n = 11/group) fed either with human milk (HM) or milk formula (MF) at PND 21. Uniprot_ID Organism Phocaeicola vulgatus (Bacteroides vulgatus) Protein Name RagB/SusD loved ones nutrient uptake outer membrane protein RagB/SusD household nutrient uptake outer membrane protein Uncharacterized protein SusD household protein Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) (polynucleotide phosphorylase) (PNPase) Beta-galactosidase (EC 3.2.1.23) Malate dehydrogenase (EC 1.1.1.37) HM 1 (sum) 51 MF 1 (sum) 573 HM two MF two Log2 FC three p-ValueA0A412VME3.47.-3.0.A0A412VMEPhocaeicola dorei Bacteroides vulgatus CL09T03C04 Bacteroides sp.